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Cannot find molecule 0 in atomselect's molid

WebTo enter query mode, type “0” (that’s a zero) in the display window, or select “Mouse...Query” from the main VMD menu. If you click on an atom, and it appears nothing happens, don’t worry. The information shows up in the terminal window that VMD … WebThe codes (molIDs) are not reused after a molecule is deleted, so if you, for example, have three molecules loaded (numbered 0, 1, 2), delete molecule with molID equal to 0, and then load another molecule, the new molecule will have molID 3. Thus, the list of available …

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WebKeeping Atoms or a Molecule in the Center and Aligned 6.3. Modify a Selection During a Trajectory 6.4. Using the User Field for Computed Selections 6.5. Tracing a Dynamic Property 7. Visualizing Volumetric Data from Cube-Files 7.1. Electron Density and Electrostatic Potential 7.2. Canonical and Localized Orbitals 7.3. http://www.theochem.ruhr-uni-bochum.de/~legacy.akohlmey/cpmd-vmd/part4.html newest tv shows 2022 https://shinestoreofficial.com

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WebVMD-L Mailing List. From: Mustafa Tekpinar (tekpinar_at_buffalo.edu) Date: Wed Feb 01 2012 - 13:38:34 CST Next message: Albert: "is it possible to enable GPU rendering?" Previous message: R. Charbel Maroun: "Save coor coordinates as pdb" Maybe in reply … Web> Cannot find molecule 0 in atomselect's 'molId' > can't read "pdb_name": no such variable > can't read "data_file_name": no such variable > can't read "traj_psf": no such variable > can't read "traj_dcd": no such variable > Cannot find molecule 1 in … WebFeb 21, 2007 · There is no 'top' molecule in atomselect's 'molId' can't read "all": no such variable segid WT1 to WT99 and same residue as abs (z) <10 There is no 'top' molecule in atomselect's 'molId' can't read "sel": no such variable There is no 'top' molecule in atomselect's 'molId' can't read "badwater": no such variable interrupted medicare stay

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Cannot find molecule 0 in atomselect's molid

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WebMay 20, 2009 · &gt; a new molecules and thus the selections referring &gt; to molecule 0 will only refer to the .pdb file which &gt; has only one frame, whereas the referring to the top &gt; molecule will give you the number of frames of the &gt; dcd file. WebFunded by a grant from the National Institute of General Medical Sciences of the National Institutes of Health

Cannot find molecule 0 in atomselect's molid

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WebOct 14, 2007 · with VMD main &gt; Mouse &gt; Move &gt; Molecule. Then saved coordinates for the protein as pdb file. 4) Downloaded scripts combine.tcl and top_all27_pro_lipid.inp into the working directory. 5) vmd -dispedev text &lt; combine.tcl tee combine.log reported "top … WebNov 21, 2006 · vmd couldn't load the molecule, since I have changed from "mol load" to "mol new". I added "waitfor all" at the end of "mol new" and "mol addfile". ERROR) No molecules loaded.mol new operates on one molecule only Cannot find molecule 0 in …

WebThe first step is to create aselection given the selection text, molecule id, and optional framenumber. This is done by a function called atomselect, which returns thename of the new atom selection. the second step is to use the createdselection to access the … WebSep 16, 2002 · lappend atom2bonds $atom1id. $sel setbonds [list $atom1bonds $atom2bonds] What I did was to get the list of bonds for each atom, and then append the. id of each atom to the other's bond list. Then I took the new bond lists. and applied them to …

WebMar 9, 2024 · While running the epock vmd gui (1.9.2) the following error occurs when selecting atoms for sphere placement: atomselect: cannot parse selection text: atomselect: cannot parse selection text: while executing"atomselect $::epock::molid …

Web// here I have 'molid', so get the given molecule Molecule *mol = mlist-&gt; mol_from_id (molid); if (!mol) { Tcl_AppendResult (interp, "Cannot find molecule ", text, NULL); } return mol; } ///// tcl interface to the AtomSel object // forward definitions static int …

WebOct 14, 2007 · There is no 'top' molecule in atomselect's 'molId' can't read "sellip": no such variable can't read "lseglist": no such variable -55 41 -51 34 There is no 'top' molecule in atomselect's 'molId' MOLECULE MISSING! Use resetpsf to start over. MOLECULE MISSING! Use resetpsf to start over. Info) VMD for LINUX, version 1.8.6 (April 6, 2007) interrupted medullaWeb# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # --- DISCLAIMER (by Clement Arnarez, [email protected]): # # # # This script is ... interrupted melody 1955 plotWebset sel1 [atomselect 0 "name Fe"] set sel2 [atomselect 1 "resid 2814"] setbonds 0 1 The effect was : Cannot find molecule 1 in atomselect's 'molId Thank you very much. Yves Frapart Next message: Justin Gullingsrud: "Re: Drawing atom - atom bonds" Previous … interrupted melody 1955 720p