WebOct 14, 2024 · The chromosome location of the identified SmAP2/ERF genes was constructed using TBtools. In total, 310 genes from the AP2/ERF superfamily were unevenly distributed on 38 chromosomes ; 54 other genes located on scaffolds were not illustrated in Fig. 4. The chromosome with the largest number of AP2/ERF genes was … WebBased on TPSs which overlapped with SVs, we performed gene structure analysis in different varieties using TBtools (version 1.09) (Chen C. et al., 2024). The motifs of TPS sequences were...
Genome-wide investigation of the AP2/ERF superfamily and their ... - PeerJ
WebJul 31, 2024 · We found five tandem duplication (TD) gene pairs ( Figure 1) ( OsCOMT5 / OsCOMT6, OsCOMT8 / OsCOMT9, OsCOMT23 / OsCOMT24, OsCOMT24 / OsCOMT25, and OsCOMT30 / OsCOMT31) on four chromosomes (Chr4, Chr5, Chr11, and Chr12). One whole-genome duplication (WGD) event containing two OsCOMTs ( OsCOMT1 / … WebTbtools 480 subscribers Gene Structure Visualization in tbtool includes variety of options. TBTOOLS help you to visualize gene exon-introns, promoter sequences, motifs … how to clean a trout youtube
IJMS Free Full-Text Genome-Wide Identification and …
WebApr 13, 2024 · Gene structure and motif analysis of LcWRKYs. The blue boxes, green boxes, and thin black lines represent the UTR, CDS, and introns, respectively. MEME analysis revealed conserved motifs of LcWRKY proteins. Colored boxes on the right denote 30 motifs. 2.3. Gene Duplication Analysis WebJul 4, 2024 · TBtools has a convenient function - “Gene Density Profile,” which allows users to profile gene density from gene structure annotation files, commonly in GFF3 and GTF format. In the “Control Dialog” panel, … Web1 day ago · Gene structure is another important index defining the evolution or divergence of multigene family members. Consequently, an exon-intro diagram of soybean GmTPSs was also constructed to detect the structural diversity. The number of introns ranged from six to fourteen in GmTPSs. how to clean a trumpet mouthpiece